Aravind Mandiga
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126
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2026
ProtStructQA: A Denotation Threshold in Protein Structural Reasoning
The paper introduces ProtStructQA, an executable benchmark that tests protein structural reasoning by requiring language models to generate measurable 3D coordinates, revealing a capability-dependent transition point where chain-of-thought reasoning surpasses tool-mediated approaches.
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cs.CLRecentMay 30, 2026
ProtStructQA: A Denotation Threshold in Protein Structural Reasoning
Aravind Mandiga, Guoming Li, Jin Lu, Ismailcem Budak Arpinar +2 more
The paper introduces ProtStructQA, an executable benchmark that tests protein structural reasoning by requiring language models to generate measurable 3D coordinates, revealing a capability-dependent…
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