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20 results for “DNA-based data storage”

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cs.IRTheoreticalRecentJun 12, 2026

Private Information Retrieval for Large-Scale DNA-Based Data Storage

Gökberk Erdoğan, Daniella Bar-Lev, Rawad Bitar, Antonia Wachter-Zeh +1 more

This paper proposes two approaches for applying two-server Private Information Retrieval (PIR) protocols to synthetic DNA-based data storage, addressing privacy, efficiency, and feasibility challenges…

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cs.CRcond-mat.otherq-bio.OTRecentMar 17, 2026

Synchronized DNA sources for unconditionally secure cryptography

Sandra Jaudou, Hélène Gasnier, Elias Boudjella, Marc Canève +10 more

The paper introduces a DNA-based cryptographic primitive that uses shared, sequenced DNA molecules to generate a common binary mask for One-Time Pad (OTP) encryption, achieving unconditional security…

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cs.ITTheoreticalRecentJun 19, 2026

Error Exponent Bounds for Optimal Short-Read Clustering

Yoav Chachamovitz, Nir Weinberger

This paper derives bounds on the probability of incorrect clustering of noisy short sequences using statistically optimal rules, focusing on DNA storage decoders.

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cs.DBcs.AIEmpiricalRecentJul 8, 2026

Breaking Database Lock-in: Agentic Regeneration of High Performance Storage Readers for Database Bypass

Victor Giannakouris, Immanuel Trummer

Jailbreak bypasses database engines by reading storage files directly and materializing data as in-memory columnar buffers using LLM-assisted code synthesis.

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q-bio.BMcs.ARcs.ETEmpiricalRecentJun 15, 2026

Energy-efficient codon optimization on thermodynamic hardware

Andraz Jelincic, Ross C. Walker

This paper presents the first application of thermodynamic computing to mRNA codon optimization in pharmaceutical R&D, achieving significant energy savings compared to conventional GPUs.

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cs.DBcs.DCcs.PFEmpiricalRecentJun 26, 2026

DiStash: A Disaggregated Multi-Stash Transactional Key-Value Store

Yiming Gao, Hieu Nguyen, Jun Li, Shahram Ghandeharizadeh

This paper introduces DiStash, a disaggregated transactional key-value store that enables an application to use a single transaction to manage key-value pairs across different pools of stashes, preven…

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cs.CRRecentApr 30, 2026

Secure Cross-Silo Synthetic Genomic Data Generation

Daniil Filienko, Martine De Cock, Sikha Pentyala

The paper proposes a novel framework that enables multiple institutions to jointly train a synthetic genomic data generator without revealing their raw data, thereby facilitating large-scale, privacy-…

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cs.DCcs.DSTheoreticalRecentJun 15, 2026

Space-Efficient Lock-Free Linear-Probing Hash Table

Hagit Attiya, Rotem Oshman, Noa Schiller

This paper presents a lock-free linear-probing hash table with wait-free lookups, using a small amount of metadata and maintaining space efficiency.

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cs.ITcs.CRTheoreticalRecentJul 23, 2026

Weak Private Information Retrieval for Graph-based Storage

Shodasakshari Vidya, Chandan Anand, Prasad Krishnan

This paper proposes a Graph-based Weak Private Information Retrieval (G-WPIR) scheme for distributed storage systems with graph-based replication, identifying trade-offs between rate and privacy under…

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cs.CRcs.AIcs.DCRecentMay 31, 2026

memorywire: A Vendor-Neutral Wire Format for Agent Memory Operations

Thamilvendhan Munirathinam

The paper introduces memorywire, a vendor-neutral JSON-Schema 2020-12 wire format and reference implementation to standardize and govern agent memory operations across diverse, proprietary agent-memor…

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cs.ITcs.AImath.CTTheoreticalRecentJul 15, 2026

CAS I: A Geometric Coding Theorem

Romie Banerjee

This paper establishes a Coding Theorem in the context of symmetry groups and develops a connection between subgroups of a group and subsets of binary strings.

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cs.AIEmpiricalRecentJul 9, 2026

Ideas Have Genomes: Benchmarking Scientific Lineage Reasoning and Lineage-Grounded Idea Generation

Yifan Zhou, Qihao Yang, Yan Li, Donggang Li +13 more

The paper introduces IdeaGene-Bench, a benchmark for scientific lineage reasoning and idea generation, which includes 1,961 golden lineage traces, 1,085 curated Idea Genome objects, and 920 pairwise G…

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cs.CRcs.AIcs.DCRecentMay 31, 2026

AMP: A Vendor-Neutral Wire Format for Agent Memory Operations

Thamilvendhan Munirathinam

The paper introduces memorywire, a vendor-neutral JSON-Schema wire format and reference implementation designed to standardize and govern memory operations across disparate agent-memory frameworks.

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cs.ITcs.DSEmpiricalRecentJun 16, 2026

The 2026 Algorithmic Information Theory Data Compression Challenge

André Ribeiro, Rúben Garrido, Violeta Ramos, António Alberto +27 more

This paper presents the 2026 Algorithmic Information Theory Data Compression Challenge, evaluating lossless compressors under realistic constraints and revealing performance dependencies.

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cs.ARcs.DBcs.ETRecentJun 2, 2026

ACRONYM: Accelerated Approximate Nearest Neighbor Search in Memory for Dynamic Vector Databases

Md Mizanur Rahaman Nayan, Tianqi Zhang, Flavio Ponzina, Tajana Rosing +1 more

ACRONYM is a novel algorithm-hardware co-designed platform that enables high-recall, continuous approximate nearest neighbor search in memory for dynamic vector databases, achieving massive throughput…

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cs.CRcs.AIRecentMay 27, 2026

Domain-Informed Representation for Evolutionary Sieving in Integral and Module Lattices

Ahmad Tashfeen, Qi Cheng

This paper enhances a genetic algorithm approach for solving the Shortest Vector Problem (SVP) in lattices by incorporating domain-informed representation, thereby extending its applicability to modul…

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